Appendix A. Environmental covariates considered for mixed effects models of Cerulean Warbler habitat associations in the prairiehardwood transition, 19812001. Landscape composition and configuration were calculated with FRAGSTATS 3.1 according to McGarigal et al. (2002).
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Variable |
Acronym and Description (if needed) |
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Land cover composition |
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Percent Composition by Class |
%CLASS |
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Median Class Density |
AREA_MDclass; area in land use |
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Range in Class Density |
AREA_RAclass; range in area in land use |
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Modified Simpson’s Diversity Index |
MSIDI; landscape; quantify diversity at the landscape level |
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Patch Richness Density |
PRD; landscape; number of patch types present |
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Land cover configuration |
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Forest Fragmentation Index |
FRAG; See Riitters et al. (2000) |
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Median Patch Size |
PATCHclass; class variable |
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Median Perimeter to Area Ratio |
PARA_MDclass; class variable; equals ratio of the patch perimeter (m) to area (m2). |
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Perimeter to Area Ratio Range |
PARA_RAclass; class; measure of variability in the PARA ratio. |
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Median Shape Index |
SHAPE_MDclass; class; measures the complexity of patch shape compared to a standard shape (square) of the same size; alleviates the size dependency problem of PARA |
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Shape Index Range |
SHAPE_RAclass; class; a measure of the variety of land use class shapes. Less variety likely related to human modification of landscape (e.g., row crop field shapes are highly similar) |
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Aggregation Index |
AIclass; class. Percentage based on the ratio of observed number of like adjacencies; a measure of contagion. |
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Mass Fractal Dimension |
MFRAC; class; tendency of patch types to be spatially aggregated. Measures contagion or interspersion of a land use class; varies between 0 and 2. |
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Perimeter to Area Fractal Dimension |
PAFRACclass; class; describes how patch perimeter increases per unit increase in patch area |
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Interspersion and Juxtaposition Index |
IJI; class; a measure of patch adjacency |
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Cohesion |
COHESIONclass; class; connectivity of habitat as perceived by organisms dispersing in binary landscapes |
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Median Core Area Density |
CORE_MD; class; area of land use patch after elimination of edge |
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Range in Core Area Density |
CORE_RA; class; variability in area unaffected by edge |
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Median Proximity |
PROX_MDclass; class; size and proximity of all patches whose edges are within a specified search radius of the focal patch |
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Range in Proximity |
PROX_RAclass; class |
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Median Perimeter to Area Ratio |
PARA_MDland; landscape; as for class, but for entire landscape, irrespective of land use |
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Range in Perimeter to Area Ratio |
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Median Shape Index |
SHAPE_MDland; landscape; as for class, but for entire landscape, irrespective of land use |
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Range in Shape Index |
SHAPE_RAland; landscape; as for class, but for entire landscape, irrespective of land use |
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Aggegration Index |
AIland; landscape; as for class, but for entire landscape, irrespective of land use |
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Contagion |
CONTAG; landscape; probability of finding a cell of type i next to a cell of type j, based on cell adjacencies |
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Perimeter to Area Fractal Dimension |
PAFRACland; landscape; as for class, but for entire landscape, irrespective of land use |
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Cohesion |
COHESIONland; landscape; as for class, but for entire landscape, irrespective of land use |
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Median Core Area Density |
CORE_MDland; landscape; as for class, but for entire landscape, irrespective of land use |
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Range in Core Area Density |
CORE_RAland; landscape; as for class, but for entire landscape, irrespective of land use |
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Median Proximity |
PROX_MDland; landscape; as for class, but for entire landscape, irrespective of land use |
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Range in Proximity |
PROX_RAland; landscape; as for class, but for entire landscape, irrespective of land use |
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Topography |
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Elevation |
ELEV |
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Slope (˚) |
SLP |
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Aspect |
AZ; azimuth from N in degrees |
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Ruggedness Index (250 m window) |
RUG250; Standard Deviation of Elevation within 250 m moving window |
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Ruggedness Index (500 m window) |
RUG500; Standard Deviation of Elevation within 500 m moving window |
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Ruggedness Index (1,000 m window) |
RUG1,000; Standard Deviation of Elevation within 1,000 m moving window |
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Topographic Index (250 m window) |
TOPO250; Difference in Elevation between focal cell and mean within 250 m window |
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Topographic Index (500 m window) |
TOPO500; Difference in Elevation between focal cell and mean within 500 m window |
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Topographic Index (1,000 m window) |
TOPO1,000; Difference in Elevation between focal cell and mean within 1,000 m window |
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Topographic Wetness Index |
WET; ln(Catchment Area/tangent of the slope angle); |
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“Stream Power” Index |
POW; Aspect x Slope% |
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Mean Angular Deviation of Aspect |
MAD; variability in aspect |
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Mean Stream Density |
STREAM |
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Mean Proximity to Stream |
PROXStream |
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Climate |
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Annual Mean Temperature |
TEMP_MN |
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Mean Diurnal Temperature Range |
TEMP_RA; Max Temperature of Warmest Month- Min Temperature of Coldest Month |
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Isothermality |
ISO; Mean Diurnal Range/Temperature Annual Range |
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Temperature Seasonality |
TEMP_CV; Coefficient of Variation in Temperature |
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Max Temperature of Warmest Month |
TEMP_MAX |
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Min Temperature of Coldest Month |
TEMP_MIN |
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Mean Temperature of Wettest Quarter |
WTEMP_MN; For wettest 3 months |
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Mean Temperature of Driest Quarter |
DTEMP_MN; For driest 3 months |
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Mean Temperature of Warmest Quarter |
HTEMP_MN; For warmest 3 months |
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Mean Temperature of Coldest Quarter |
CTEMP_MN; For coldest 3 months |
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Annual Precipitation |
PRCP |
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Precipitation of Wettest Month |
PRCP_MAX |
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Precipitation of Driest Month |
PRCP_DRY |
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Precipitation Seasonality |
PRCP_CV; Coefficient of Variation in Precipitation |
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Precipitation of Wettest Quarter |
WPRCP |
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Precipitation of Driest Quarter |
DPRCP |
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Precipitation of Warmest Quarter |
HPRCP |
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Precipitation of Coldest Quarter |
CPRCP |
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Day of year (number) for start of growing season |
GROWST |
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Day of year (number) for end of growing season |
GROWEND |
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Number of days of growing season |
GROWDAYS |
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Total precipitation for the 1st six weeks of the growing season |
PRCP_6GRW |
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Total precipitation for the growing season |
PRCP_GROW |
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Growing degree days above base temperature for 3 months prior to the start of the growing season |
DEG_PGRW |
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Growing degree days above base temperature for the 1st six weeks of the growing season |
DEG_6GRW |
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Growing degree days above base temperature for the growing season |
DEG_GROW |
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Mean temperature for the growing season |
TEMP_GROW |
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Temperature range for the growing season |
TEMP_RAGR |
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Potential Human Disturbance |
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Mean Road Density |
ROAD |
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Mean Human Density |
HUMAN; Mean county-level human population density |
LITERATURE CITED
McGarigal, K., S. A. Cushman, M. C. Neel, and E. Ene. 2002. FRAGSTATS: Spatial pattern analysis program for categorical maps. University of Massachusetts, Amherst, Massachusetts, USA.
Riitters, K. H., J. D. Wickham, R. V. O'Neill, K. B. Jones, and E. R. Smith. 2000. Global scale patterns of forest fragmentation. Conservation Ecology 4:3.