Ecological Archives E085-067-A2

Hafiz Maherali, William T. Pockman, and Robert B. Jackson. 2004. Adaptive variation in the vulnerability of woody plants to xylem cavitation. Ecology 85:2184–2199.

Appendix B. Sources of phylogenetic information and polytomy resolutions for selected taxa. Literature sources resolved all but six polytomies.

Taxa

Reference

ANGIOSPERMS

Soltis et al. 1999, 2000

Aceraceae

Ackerly and Donoghue 1998, partly unresolved

Betulaceae (Alnus, Betula)

Chen et al. 1999, Savard et al. 1993; partly unresolved.

Asteraceae (Ambrosia, Artemisia, Baccharis, Chrysothamnus, Encelia, Hymonoclea, Tetradymia)

Bremer 1994

Dipterocarpaceae (Cotylobium, Dipterocarpus, Dryobalanops, Shorea)

Kajita et al. 1998, Dayanandan et al. 1999; partly unresolved

Ebenaceae (Diospyros)

Unresolved

Ericaceae (Arbutus, Oxydendron, Rhododendron)

Kron and Chase 1993

Fagaceae (Fagus, Quercus)

Manos et al. 1997, 1999, P. S. Manos, personal communication; partly unresolved.

Fabaceae (Acacia, Ceratonia, Cercidium, Cercis, Coursetia, Lonchocarpus, Pithecellobium, Prosopis, Sindora)

Crisp and Doyle 1995; Kajita et al. 2001, Bruneau et al. 2001

Myrtaceae (Eucalyptus, Eugenia)

Unresolved

Oleaceae (Fraxinus)

Jeandroz et al. 1997

Rhamnaceae (Ceanothus)

Jeong et al. 1997, Hardig et al. 2000

Salicaceae (Populus, Salix)

Smith and Systma 1990

CONIFERS

Chase et al. 1993, Rice et al. 1997, Stefanovic et al. 1999

Auracariaceae (Agathis)

Stefanovic et al. 1999

Cupresseaceae (Actinostrobus, Athrotaxis, Callitris, Juniperus, Thuja, Widdringtonia)

Adams and Demeke 1993, Adams 2000a, 2000b; Rice et al. 1997, Stefanovic et al. 1999

Pinaceae (Abies, Cedrus, Larix, Pinus, Picea, Pseudotsuga, Tsuga)

Robson et al. 1993, Schwilk and Ackerly 2001, Smith and Klein 1994, Stefanovic et al. 1999

Podocarpaceae (Acmopyle, Dacrycarpus, Lagarostrobus, Podocarpus)

Conran et al. 2000

Literature Cited

Ackerly, D. D., and M. J. Donoghue. 1998. Leaf size, sapling allometry, and Corner's rules: a phlyogenetic study of correlated evolution in maples (Acer). American Naturalist 152:767–791.

Adams, R. P., and T. Demeke. 1993. Systematic relationships in Juniperus based on amplifed polymorphic DNAs (RAPDs). Taxon 42:553–571.

Adams, R. P. 2000a. Systematics of smooth leaf margin Junipirus of the western hemisphere based on leaf essential oils and RAPD DNA fingerprinting. Biochemical Systematics and Ecology. 28:149–162.

Adams, R. P. 2000b. The serrate leaf margined Juniperus (Section Sabina) of the western hemisphere: systematics and evolution based on leaf essential oils and random amplified polymorphic DNA (RAPDs). Biochemical Systematics and Ecology 28:975–989.

Bremer, K. 1994. Asteraceae:cladistics and classification. Timber Press, Portland, Oregon, USA.

Bruneau, A., F. Forest, P. S. Herendeen, B. B. Klitgaard, and G. P. Lewis. 2001. Phylogenetic relationships in the Caesalpinioideae (Leguminoseae) as inferred from chloroplast trnL intron sequences. Systematic Botany 26:487–514.

Conran, J. G., G. M. Wood, P. G. Martin, and J. M. Dowd. 2000. Generic relationships within and between the gymnosperm families Podocarpaceae and Phyllocladaceae based on an analysis of the chloroplast gene rbcL. Australian Journal of Botany 87:715–724.

Chase, M. W. et al. 1993. Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Annals of the Missouri Botanical Garden 80:528–580.

Chen, Z. D., S. R. Manchester, and H.Y. Sun. 1999. Phylogeny and Evolution of the Betulaceae as inferred from DNA sequences, morphology, and paleobotany. American Journal of Botany 86:1168–1181.

Crisp, M. D., and J. J. Doyle. 1995. Advances in Legume systematics. Part 7: Phylogeny. Royal Botanic Gardens, Kew, UK.

Dayanandan, S., P. S. Ashton, S. M. Williams, and R. B. Primack. 1999. Phylogeny of the tropical tree family Dipterocarpaceae based on nucleotide sequences of the chloroplast rbcL gene. American Journal of Botany 86:1182–1190.

Hardig, T. M., P. S. Soltis, and D. E. Soltis. 2000. Diversification of the North American shrub genus Ceanothus (Rhamnaceae): conflicting phylogenies from nuclear ribosomal DNA and chloroplast DNA. American Journal of Botany 87:108–123.

Jeandroz, S., A. Roy, and J. Bousquet. 1997. Phylogeny and biogeography of the circumpolar genus Fraxinus (Oleaceae) based on internal transcribed spacer sequences of nuclear ribosomal DNA. Molecular Phylogenetics and Evolution 7:241–251

Jeong, S. C., A. Liston, and D. D. Myrold. 1997. Molecular phylogeny of the genus Ceanothus (Rhamnaceae) using rbcL and ndhF sequences. Theoretical and Applied Genetics 94:852–857.

Kajita, T., K. Kamiya, K. Nakamura et al. 1998. Molecular Phylogeny of the Dipterocarpaceae in southeast Asia based on nucleotide sequences of matK, trnL intron, and trnL-trnF intergenic spacer region in chloroplast DNA. Molecular Phylogenetics and Evolution, 10:202–209.

Kajita, T., H. Ohashi, Y. Tateishi, C. D. Bailey, and J. J. Doyle. 2001. RbcL and Legume phylogeny, with particular reference to Phaseoleae, Millettieaie, and allies. Systematic Botany 26:515–536.

Kron, K. A., and M. W. Chase. 1993. Systematics of the Ericaceae, Epacridaceae and related taxa based upon rbcL sequence data. Annals of the Missouri Botanical Garden 80:735–741.

Manos, P. S., J. J. Doyle, and K. C. Nixon. 1999. Phylogeny, Biogeography, and processes of molecular differentiation in Quercus subgenus Quercus (Fagaceae). Molecular Phylogenetics and Evolution 12:333–349.

Manos, P. S., and K. P. Steele. 1997. Phylogenetic analyses of "higher" Hamamelididae based on plastid sequence data. American Journal of Botany 84:1407–1419.

Rice, K. A., M. J. Donoghue, and R. G. Olmstead. 1997. Analyzing large data sets: rbcL revisted. Systematic Biology, 46:554–563.

Robson, K. A., J. Maze, R. K. Scagel, and S. Banerjee. 1993. Ontogeny, phylogeny and intraspecific variation in North American Abies Mill. (Pinaceae): an empirical approach to organization and evolution. Taxon 42:17–24.

Savard, L., M. Michaud, and J. Bosquet. 1993. Genetic diversity and phylogenetic relationships between birches and alders using ITS, 18S rRNA, and rbcL gene sequences. Molecular Phylogenetics and Evolution 2:112–118.

Schwilk, D.W., and D. D. Ackerly. 2001. Flammability and serotiny as strategies: correlated evolution in pines. Oikos 94:326–336.

Smith, D. E., and A. S. Klein. 1994. Phylogenetic inferences on the relationship of North American and European Picea species based on nuclear ribosomal 18S sequences and the internal transcribed spacer 1 region. Molecular Phylogenetics and Evolution 3:17–26.

Smith, R. L., and K. J. Systma. 1990. Evolution of Populus nigra (sect. Aigeiros): introgressive hybridization and the chloroplast contribution of Populus alba (sect. Populus). American Journal of Botany. 77:1176–1187.

Soltis D. E., P. S. Soltis, M. W. Chase, M. E. Mort, D. C. Albach et al. 2000. Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences. Botanical Journal of the Linnean Society. 133:381–461.

Soltis P. S., D. E. Soltis, and M. W. Chase. 1999. Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature 402:402–404.

Stefanovic, S., M. Jager, J. Deutsch, J. Broutin, and M. Masselot. 1998. Phylogenetic relationships of conifers inferred from partial 28S rRNA gene sequences. American Journal of Botany 85:688–697.



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