Appendix B. Sources of phylogenetic information and polytomy resolutions for selected taxa. Literature sources resolved all but six polytomies.
|
Taxa |
Reference |
|
ANGIOSPERMS |
Soltis et al. 1999, 2000 |
|
Aceraceae |
Ackerly and Donoghue 1998, partly unresolved |
|
Betulaceae (Alnus, Betula) |
Chen et al. 1999, Savard et al. 1993; partly unresolved. |
|
Asteraceae (Ambrosia, Artemisia, Baccharis, Chrysothamnus, Encelia, Hymonoclea, Tetradymia) |
Bremer 1994 |
|
Dipterocarpaceae (Cotylobium, Dipterocarpus, Dryobalanops, Shorea) |
Kajita et al. 1998, Dayanandan et al. 1999; partly unresolved |
|
Ebenaceae (Diospyros) |
Unresolved |
|
Ericaceae (Arbutus, Oxydendron, Rhododendron) |
Kron and Chase 1993 |
|
Fagaceae (Fagus, Quercus) |
Manos et al. 1997, 1999, P. S. Manos, personal communication; partly unresolved. |
|
Fabaceae (Acacia, Ceratonia, Cercidium, Cercis, Coursetia, Lonchocarpus, Pithecellobium, Prosopis, Sindora) |
Crisp and Doyle 1995; Kajita et al. 2001, Bruneau et al. 2001 |
|
Myrtaceae (Eucalyptus, Eugenia) |
Unresolved |
|
Oleaceae (Fraxinus) |
Jeandroz et al. 1997 |
|
Rhamnaceae (Ceanothus) |
Jeong et al. 1997, Hardig et al. 2000 |
|
Salicaceae (Populus, Salix) |
Smith and Systma 1990 |
|
CONIFERS |
Chase et al. 1993, Rice et al. 1997, Stefanovic et al. 1999 |
|
Auracariaceae (Agathis) |
Stefanovic et al. 1999 |
|
Cupresseaceae (Actinostrobus, Athrotaxis, Callitris, Juniperus, Thuja, Widdringtonia) |
Adams and Demeke 1993, Adams 2000a, 2000b; Rice et al. 1997, Stefanovic et al. 1999 |
|
Pinaceae (Abies, Cedrus, Larix, Pinus, Picea, Pseudotsuga, Tsuga) |
Robson et al. 1993, Schwilk and Ackerly 2001, Smith and Klein 1994, Stefanovic et al. 1999 |
|
Podocarpaceae (Acmopyle, Dacrycarpus, Lagarostrobus, Podocarpus) |
Conran et al. 2000 |
Literature Cited
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Bremer, K. 1994. Asteraceae:cladistics and classification. Timber Press, Portland, Oregon, USA.
Bruneau, A., F. Forest, P. S. Herendeen, B. B. Klitgaard, and G. P. Lewis. 2001. Phylogenetic relationships in the Caesalpinioideae (Leguminoseae) as inferred from chloroplast trnL intron sequences. Systematic Botany 26:487514.
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Chase, M. W. et al. 1993. Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Annals of the Missouri Botanical Garden 80:528580.
Chen, Z. D., S. R. Manchester, and H.Y. Sun. 1999. Phylogeny and Evolution of the Betulaceae as inferred from DNA sequences, morphology, and paleobotany. American Journal of Botany 86:11681181.
Crisp, M. D., and J. J. Doyle. 1995. Advances in Legume systematics. Part 7: Phylogeny. Royal Botanic Gardens, Kew, UK.
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Kron, K. A., and M. W. Chase. 1993. Systematics of the Ericaceae, Epacridaceae and related taxa based upon rbcL sequence data. Annals of the Missouri Botanical Garden 80:735741.
Manos, P. S., J. J. Doyle, and K. C. Nixon. 1999. Phylogeny, Biogeography, and processes of molecular differentiation in Quercus subgenus Quercus (Fagaceae). Molecular Phylogenetics and Evolution 12:333349.
Manos, P. S., and K. P. Steele. 1997. Phylogenetic analyses of "higher" Hamamelididae based on plastid sequence data. American Journal of Botany 84:14071419.
Rice, K. A., M. J. Donoghue, and R. G. Olmstead. 1997. Analyzing large data sets: rbcL revisted. Systematic Biology, 46:554563.
Robson, K. A., J. Maze, R. K. Scagel, and S. Banerjee. 1993. Ontogeny, phylogeny and intraspecific variation in North American Abies Mill. (Pinaceae): an empirical approach to organization and evolution. Taxon 42:1724.
Savard, L., M. Michaud, and J. Bosquet. 1993. Genetic diversity and phylogenetic relationships between birches and alders using ITS, 18S rRNA, and rbcL gene sequences. Molecular Phylogenetics and Evolution 2:112118.
Schwilk, D.W., and D. D. Ackerly. 2001. Flammability and serotiny as strategies: correlated evolution in pines. Oikos 94:326336.
Smith, D. E., and A. S. Klein. 1994. Phylogenetic inferences on the relationship of North American and European Picea species based on nuclear ribosomal 18S sequences and the internal transcribed spacer 1 region. Molecular Phylogenetics and Evolution 3:1726.
Smith, R. L., and K. J. Systma. 1990. Evolution of Populus nigra (sect. Aigeiros): introgressive hybridization and the chloroplast contribution of Populus alba (sect. Populus). American Journal of Botany. 77:11761187.
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Soltis P. S., D. E. Soltis, and M. W. Chase. 1999. Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature 402:402404.
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