Ecological Archives E088-031-A2

Sandrine Pavoine, Jacques Blondel, Michel Baguette, and Daniel Chessel. 2007. A new technique for ordering asymmetrical three-dimensional data sets in ecology. Ecology 88:512–523.

Appendix B. Absolute Contributions of species, modalities of factor#A, and #B in the two case studies.


The absolute contributions are calculated from the reference analysis. For each factorial axis, the first ten highest values are written in bold. They are in percentages * 10 000.

Absolute contributions of species, vegetation stages and local regions in the analyses of the convergence of bird assemblages in European forests

1. Analysis of the changes in species-vegetation stage pattern among local region.

Absolute contributions of the species

  F1 F2
Aegithalos caudatus 48 3
Alauda arvensis 4 15
Alectoris rufa 11 1
Anthus campestris 79 153
Anthus trivialis 6 178
Carduelis chloris 15 269
Carduelis cannabina 303 217
Carduelis Carduelis 103 16
Certhia brachydactyla 360 439
Certhia familiaris 57 77
Cisticola juncidis 4 12
Clamator glandarius 1 12
Corvus cornix 2 0
Coturnix coturnix 9 29
Coccothraustes coccothraustes 11 64
Columba oenas 4 8
Columba palumbus 0 44
Cuculus canorus 0 1
Dryocopus martius 3 5
Emberiza cirlus 83 95
Emberiza citrinella  186 95
Emberiza hortulana 178 221
Erithacus rubecula 303 9
Ficedula hypoleuca 65 119
Fringilla coelebs 367 0
Galerida cristata 15 14
Garrulus glandarius 17 21
Galerida theklae 11 37
Hippolais icterina 22 434
Hippolais polyglotta 5 1
Jynx torquilla 0 14
Lanius collurio 128 1
Lanius excubitor  25 18
Lanius senator                    5 1
Locustella fluviatilis 15 147
Locustella naevia 142 271
Lullula arborea 166 171
Luscinia luscinia 35 5
Luscinia megarhynchos 35 706
Milaria calandra 110 307
Motacilla alba 29 97
Muscicapa albicollis 193 84
Muscicapa striata 29 43
Oenanthe hispanica 379 810
Oriolus oriolus   0 100
Parus ater                      230 248
Parus caeruleus 721 264
Parus cristaleus 46 84
Parus major   175 1
Parus montanus 44 94
Parus palustris 50 0
Phylloscopus bonelli 69 13
Phylloscopus collybita  508 49
Phoenicurus phoenicurus 16 23
Phylloscopus sibilatrix  65 75
Phylloscopus trochilus  474 0
Picus canus 5 1
Picoides major 139 106
Picoides medius 30 24
Picoides minor 23 30
Picus vaillantii 7 5
Picus viridis 10 12
Prunella modularis 284 176
Pycnonotus barbatus 21 10
Pyrrhula Pyrrhula 45 17
Regulus ignicapillus 256 1
Saxicola rubetra 2 16
Saxicola torquata 23 38
Serinus canaria 1 8
Serinus citrinella 247 9
Serinus serinus 1 78
Sitta europaea 209 181
Streptopelia turtur 1 228
Sturnus unicolor  9 16
Sturnus vulgaris 209 211
Sylvia atricapilla 114 250
Sylvia borin 406 29
Sylvia cantillans 66 1168
Sylvia conspicillata 39 131
Sylvia communis 362 619
Sylvia hortensis 2 40
Sylvia melanocephala 891 121
Sylvia sarda 254 78
Sylvia undata 302 1
Tchagra senegala 6 28
Troglodytes troglodytes 42 0
Turdus merula 15 77
Turdus philomelos 1 65
Turdus viscivorus 19 10




Absolute contributions of the vegetation stages

  F1 F2
S1 2684 2885
S2 2111 367
S3 1061 2898
S4 18 2043
S5 1087 43
S6 3040 1764



2. Analysis of the changes in species-vegetation stage pattern among local region.

Absolute contributions of the species

  F1 F2 F3 F4
Aegithalos caudatus 24 322 15 118
Alauda arvensis 1 1 7 8
Alectoris rufa 7 14 27 50
Anthus campestris 15 38 42 368
Anthus trivialis 483 670 116 19
Carduelis chloris                 6 90 10 2
Carduelis cannabina 0 169 39 12
Carduelis Carduelis 66 6 182 320
Certhia brachydactyla 10 71 79 142
Certhia familiaris 11 22 46 11
Cisticola juncidis 3 3 5 0
Clamator glandarius 1 1 2 14
Corvus cornix 7 6 44 50
Coturnix coturnix 2 2 14 16
Coccothraustes coccothraustes 214 209 20 5
Columba oenas 4 1 0 0
Columba palumbus 59 74 10 2
Cuculus canorus 18 4 29 10
Dryocopus martius                3 5 1 0
Emberiza cirlus 29 25 192 216
Emberiza citrinella  811 484 39 11
Emberiza hortulana 36 91 100 883
Erithacus rubecula 5 5 14 10
Ficedula hypoleuca 54 51 78 0
Fringilla coelebs 15 34 212 19
Galerida cristata 17 16 25 0
Garrulus glandarius 18 100 38 32
Galerida theklae 10 10 15 0
Hippolais icterina              188 294 54 8
Hippolais polyglotta 2 5 6 49
Jynx torquilla 5 5 8 0
Lanius collurio 172 211 56 1
Lanius excubitor 5 14 15 133
Lanius senator  3 0 2 6
Locustella fluviatilis  60 94 17 3
Locustella naevia 72 231 158 11
Lullula arborea 46 53 261 55
Luscinia luscinia 135 211 39 6
Luscinia megarhynchos 39 272 19 1128
Milaria calandra                 33 14 135 182
Motacilla alba 31 30 4 1
Muscicapa albicollis 340 531 98 15
Muscicapa striata 3 32 21 44
Oenanthe hispanica 72 180 197 1745
Oriolus oriolus 100 173 25 6
Parus ater                      152 20 0 109
Parus caeruleus 0 18 3 38
Parus cristaleus 7 18 19 172
Parus major 18 27 41 25
Parus montanus  47 152 104 7
Parus palustris   79 98 84 5
Phylloscopus bonelli  117 24 45 105
Phylloscopus collybita  435 750 739 29
Phoenicurus phoenicurus 8 15 11 1
Phylloscopus sibilatrix 407 293 30 7
Phylloscopus trochilus 444 264 288 16
Picus canus 7 0 1 0
Picoides major  0 16 0 6
Picoides medius 28 1 4 0
Picoides minor 2 2 1 2
Picus vaillantii 9 9 13 0
Picus viridis 1 6 2 32
Prunella modularis 166 529 363 25
Pycnonotus barbatus  40 38 58 0
Pyrrhula Pyrrhula 28 88 60 4
Regulus ignicapillus           224 39 450 511
Saxicola rubetra  1 1 7 8
Saxicola torquata 0 17 2 20
Serinus canaria 1 0 4 4
Serinus citrinella 127 111 841 949
Serinus serinus 75 71 109 0
Sitta europaea 115 0 0 30
Streptopelia turtur 14 29 8 75
Sturnus unicolor 7 7 10 0
Sturnus vulgaris 232 93 4 2
Sylvia atricapilla  1 7 67 33
Sylvia borin 485 87 160 7
Sylvia cantillans 133 248 508 755
Sylvia conspicillata 7 17 18 163
Sylvia communis 175 381 354 21
Sylvia hortensis 27 4 8 32
Sylvia melanocephala 2124 1418 2027 1
Sylvia sarda 86 75 570 643
Sylvia undata 389 56 57 84
Tchagra senegala 34 32 49 0
Troglodytes troglodytes 282 0 79 191
Turdus merula 42 57 258 175
Turdus philomelos 187 2 10 0
Turdus viscivorus 0 7 19 0



Absolute contributions of the local regions

  Comp 1 Comp 2 Comp3 Comp4
Alg 3154 1799 2721 7
Bur 1779 3452 2333 134
Cor 865 459 3432 3234
Pol 3662 3470 632 81
Pro 540 820 883 6543



Absolute contributions of species, sites and years in the analyses of impoverished calcareous grassland butterfly communities.

1. Analysis of the species-site pattern along time.

Absolute contributions of the species

  F1 F2
Aglais urticae 1 204
Anthocharis cardamines 3 9
Apatura iris                 4 2
Aphantopus hyperantus 269 554
Aporia crataegi 0 25
Araschnia levana  14 77
Argynnis aglaja 71 9
Argynnis paphia 6 26
Aricia agestis 25 170
Callophrys rubi              1 64
Carcharodus alceae 0 5
Carterocephalus palaemon  9 1
Celastrina argiolus 8 5
Clossiana dia 633 30
Clossiana euphrosyne  12 98
Clossiana selene 2 4
Coenonympha arcania  624 2051
Coenonympha pamphilus  90 215
Colias alfacarensis 372 465
Colias crocea 0 16
Colias hyale  1 16
Cupido minimus  770 124
Cyaniris semiargus 1 0
Cynthia cardui 12 15
Erebia medusa                1 7
Erynnis tages 112 49
Euphydryas aurinia 0 0
Fabriciana adippe 41 118
Gonepteryx rhamni 77 179
Hamaeris lucina  10 1
Hesperia comma  3 7
Inachis io 0 3
Iphiclides podalirius 1 196
Issoria lathonia 15 2
Lasiommata maera             0 219
Lasiommata megera 28 1569
Leptidea sinapis 117 87
Limenitis camilla 4 0
Limenitis populi 19 1
Lycaena phlaeas 0 2
Lycaena tytirus 8 31
Lysandra coridon 5877 22
Maniola jurtina 1 1113
Melanargia galathea 401 1131
Melitaea cinxia 4 3
Mellicta athalia 2 16
Neozephyrus quercus         25 7
Nordmannia ilicis  1 2
Nymphalis polychloros  0 1
Ochlodes venatus 43 22
Papilio machaon 16 1
Pararge aegeria 30 313
Pieris brassicae  20 131
Pieris napi 42 10
Pieris rapae 6 64
Plebejus argus 24 13
Polygonia calbum 12 4
Polyommatus icarus  18 11
Pyrgus malvae 4 0
Pyronia tithonus 0 219
Satyrium pruni             
10 27
Satyrium spini 12 92
Satyrium walbum 10 7
Spialia sertorius 43 1
Thecla betulae  9 8
Thymelicus acteon 7 65
Thymelicus lineola  8 34
Thymelicus sylvestris 0 7
Vanessa atalanta 6 20


                       
Absolute contributions of the sites

  F1 F2
abannets1 304 490
abannets2 151 42
chalaine  128 38
fondry_des_chiens  4289 122
roche_a_lomme 582 750
roche_trouee1 115 4
rosiere  105 2
tienne_aux_boulis 172 373
tienne_aux_pauquis1 197 806
tienne_aux_pauquis2 13 146
tienne_aux_pauquis3 335 660
tienne_aux_pauquis4 1643 529
tienne_breumont 282 813
tienne_du_lion 788 2932
tienne_du_nord 897 2294



2. Analysis of the species-year pattern across sites.

Absolute contributions of the species

  F1 F2
Aglais urticae 2610 415
Anthocharis cardamines 279 35
Apatura iris 53 7
Aphantopus hyperantus 0 555
Aporia crataegi 927 165
Araschnia levana 41 80
Argynnis aglaja 321 873
Argynnis paphia 112 1
Aricia agestis 36 666
Callophrys rubi 11 0
Carcharodus alceae 57 4
Carterocephalus palaemon  1 16
Celastrina argiolus 28 165
Clossiana dia 686 145
Clossiana euphrosyne 7 105
Clossiana selene 0 14
Coenonympha arcania 8 69
Coenonympha pamphilus 338 6
Colias alfacarensis 207 33
Colias crocea 353 0
Colias hyale 77 22
Cupido minimus 6 386
Cyaniris semiargus 0 21
Cynthia cardui 647 139
Erebia medusa 0 6
Erynnis tages 19 320
Euphydryas aurinia 0 0
Fabriciana adippe 17 128
Gonepteryx rhamni  551 545
Hamaeris lucina 2 28
Hesperia comma 51 32
Inachis io 20 0
Iphiclides podalirius 38 107
Issoria lathonia 66 0
Lasiommata maera            36 134
Lasiommata megera 30 24
Leptidea sinapis 83 959
Limenitis camilla 2 0
Limenitis populi 2 32
Lycaena phlaeas 69 149
Lycaena tytirus 5 1
Lysandra coridon 103 56
Maniola jurtina 2 6
Melanargia galathea 663 78
Melitaea cinxia 2 58
Mellicta athalia 1 26
Neozephyrus quercus 0 1
Nordmannia ilicis 4 0
Nymphalis polychloros 49 37
Ochlodes venatus 52 0
Papilio machaon 14 70
Pararge aegeria 17 13
Pieris brassicae 0 342
Pieris napi 53 13
Pieris rapae 99 722
Plebejus argus 39 183
Polygonia calbum 29 5
Polyommatus icarus 489 343
Pyrgus malvae 346 800
Pyronia tithonus 16 64
Satyrium pruni             
 24 6
Satyrium spini 13 39
Satyrium walbum 13 2
Spialia sertorius 6 67
Thecla betulae 1 43
Thymelicus acteon 23 77
Thymelicus lineola 108 45
Thymelicus sylvestris 0 82
Vanessa atalanta 38 434


Absolute contributions of the years

  F1 F2
a2003 4512 253
a2004 4448 3082
a2005 1040 6664

 


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