Ecological Archives E093-047-A2

Michelle H. Hersh, Rytas Vilgalys, and James S. Clark. 2012. The network of host–pathogen interactions: evaluating the impacts of multiple generalist fungal pathogens on tree seedling survival. Ecology 93:511–520.

Appendix B (TABLE B1). List of all fungal taxa isolated more than five times, and the BLAST results of representative samples from each taxon. Names were assigned to fungi based on NCBI BLAST results if the top-named fungal sequence had an E value of 0.0 and Max Identity greater than 97%. Top BLAST hits are reported for all taxa; if a lower hit met the aforementioned criteria and was used for naming, it was also included and preceded by its rank among BLAST hits in parentheses. Operational taxonomic unit (OTU) labels marked with an asterisk are synonymous anamorph names of fungi whose top BLAST hit used the teleomorph name.

OTU label # isol-
ations
Accession
(this study)
Top fungal BLAST hit Accession
(top hit)
Bit
score
E
value
Max
identity
(%)
*Colletotrichum acutatum 65 GQ996079 Glomerella acutata AB443950 1011 0.0 100.00
*Cylindrocarpon sp. A 52 GQ996084 Neonectria radicicola AJ875329 944 0.0 100.00
Pestalotiopsis sp. A 25 GQ996115 Pestalotiopsis cocculi EF055194 1050 0.0 100.00
Phomopsis sp. B 21 GQ996121 (1) Fungal endophyte MUT 885
(8) Phomopsis sp. VegaE4-74
AF373046
EU002933
949
906
0.0
0.0
99.28
97.23
*Phomopsis sp. D 21 GQ996122 Diaporthe phaseolorum AY577815 910 0.0 97.48
Alternaria sp. A 20 GQ996064 Alternaria alternata AB470912 960 0.0 100.00
Phialocephala sp. A 20 GQ996117 (1) Uncult. ectomycorrhiza (Phialocephala)
(2) Phialocephala fortinii
FJ803971
AY394921
975
969
0.0
0.0
100.00
99.81
Pestalotiopsis sp. C 20 GQ996116 Pestalotiopsis sp. Ht-3 FJ947050 924 0.0 100.00
Taphrina sp. A 18 GQ996129 Taphrina communis AF492088 1014 0.0 99.66
Penicillium sp. A 17 GQ996109 Penicillium sp. CLF-S AB505424 1003 0.0 100.00
Unknown fungus 38 16 GQ996078 Cylindrium elongatum AY853244 710 0.0 94.75
Cryptosporiopsis sp. A 15 GQ996082 Cryptosporiopsis ericae EF114392 940 0.0 99.81
Phomopsis sp. A 13 GQ996120 Phomopsis vaccinii EU571096 1000 0.0 99.82
Epicoccum sp. A 12 GQ996091 Epicoccum nigrum FM991735 939 0.0 100.00
Cladosporium sp. A 11 GQ996077 Cladosporium sp. MH6 FJ950740 951 0.0 100.00
Bionectria sp. G 11   GQ996069 (1) Uncultured Bionectriaceae clone
(2) Bionectria ochroleuca
EU754945
AB369487
982
982
0.0
0.0
100.00
100.00
Unknown fungus 70 10 GQ996187 (1) Basidiomycete sp. OS-S4
(2) Lachnum nudipes
AM084751
AF505517
868
742
0.0
0.0
89.46
84.43
Colletotrichum sp. B 10 GQ996081 Colletotrichum truncatum AJ301985 985 0.0 99.82
Microdiplodia sp. A 9 GQ996102 Microdiplodia sp. G16A EF432267 998 0.0 100.00
Pilidiella sp. A 9 GQ996125 Pilidiella sp. B8-71 AB465200 1058 0.0 99.66
Leptodontidium sp. A 8 GQ996142 (1) Uncultured ascomycete clone
(2) Leptodontidium orchidicola
EU003001
AF486133
1065
1058
0.0
0.0
100.00
99.83
Unknown fungus 27 8 GQ996148 Uncultured mycorrhizal fungus AY656940 919 0.0 99.42
Amphisphaeria sp. A 8   GQ996065 (1) Uncultured Amphisphaeriaceae clone
(2) Amphisphaeria sp. Kobayashi 6-(4)
EF619630
AF346545
942
921
0.0
0.0
99.26
97.83
Unknown fungus 6 8 GQ996177 Sordariomycete sp. 7423 EU680554 964 0.0 100.00
Dicarpella sp. A 7 GQ996086 Dicarpella dryina AY853241 901 0.0 99.81
Aureobasidium sp. A 6 GQ996067 Aureobasidium pullulans DQ680687 982 0.0 99.00
Phoma sp. A 6 GQ996118 Phoma herbarum AF218792 895 0.0 98.27
Penicillium sp. C 6 GQ996111 Penicillium soppii AB465208 1007 0.0 100.00
Fusarium sp. A 6 GQ996092 Fusarium sp. 08025 EU750678 969 0.0 99.81
Rhexocercosporidium sp. A 5 GQ996126 Rhexocercosporidium sp. Dzf14 EU543257 926 0.0 99.24
Discula sp. A 5 GQ996090 Discula quercina FN386280 998 0.0 99.82
Bionectria sp. AB 5 GQ996068 Bionectria compactiuscula AF210690 911 0.0 99.80
Cylindrocarpon sp. D 5   GQ996085 (1) Uncultured endophytic fungus clone
(3) Cylindrocarpon sp. BGS16
FJ524310
AB369414
940
922
0.0
0.0
100.00
99.80
Pochonia sp. A 5 GQ996181 (1) Uncultured Clavicipitaceae clone
(2) Pochonia bulbillosa
FJ553724
EU999952
975
975
0.0
0.0
99.82
99.82
Trichoderma sp. A 5 GQ996130 Trichoderma koningiopsis DQ379015 1041 0.0 99.83
Verticillium sp. B 5 GQ996182 Verticillium cf. aranearum AF108467 949 0.0 97.28

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